Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_07000 | Not Available | Negative | 1588982 - 1589992 | 38585.8 |
| hypothetical protein | DW921_07005 | Not Available | Negative | 1590159 - 1593197 | 115917.0 |
| glycosyl hydrolase | DW921_07010 | Not Available | Negative | 1593236 - 1595881 | 99542.1 |
| rna polymerase sigma-70 factor | DW921_07015 | Not Available | Positive | 1596148 - 1596702 | 21678.2 |
| hypothetical protein | DW921_07020 | Not Available | Positive | 1596803 - 1597726 | 34877.8 |
| fecr family protein | DW921_07025 | Not Available | Positive | 1597830 - 1598822 | 38491.1 |
| tonb-dependent receptor | DW921_07030 | Not Available | Positive | 1599205 - 1602342 | 117571.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW921_07035 | Not Available | Positive | 1602355 - 1603935 | 60366.7 |
| Trna-pro | Not Available | Not Available | Positive | 1604190 - 1604264 | Not Available |
| Trna-gln | Not Available | Not Available | Positive | 1604275 - 1604348 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


