Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide biosynthesis protein | DW921_06950 | Not Available | Negative | 1576598 - 1577608 | 40535.8 |
| hypothetical protein | DW921_06955 | Not Available | Positive | 1577764 - 1578546 | 30616.1 |
| acetyltransferase | DW921_06960 | Not Available | Negative | 1578587 - 1579495 | 37075.3 |
| abc transporter atp-binding protein | DW921_06965 | Not Available | Positive | 1579642 - 1581483 | 69365.5 |
| glycosyltransferase | DW921_06970 | Not Available | Negative | 1581478 - 1582374 | 34235.1 |
| hypothetical protein | DW921_06975 | Not Available | Negative | 1582384 - 1583124 | 28395.3 |
| glycosyltransferase family 2 protein | DW921_06980 | Not Available | Negative | 1583130 - 1583846 | 27279.6 |
| 4-phosphoerythronate dehydrogenase pdxb | DW921_06985 | Not Available | Positive | 1583963 - 1584973 | 37724.1 |
| alpha-l-fucosidase | DW921_06990 | Not Available | Positive | 1585027 - 1586427 | 54280.9 |
| beta-glucosidase | DW921_06995 | Not Available | Positive | 1586424 - 1588787 | 85967.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


