Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | DW921_06840 | Not Available | Positive | 1549559 - 1550305 | 28991.8 |
| arac family transcriptional regulator | DW921_06845 | Not Available | Negative | 1550310 - 1551134 | 31624.0 |
| tolc family protein | DW921_06855 | Not Available | Positive | 1552334 - 1553632 | 49599.9 |
| hlyd family secretion protein | DW921_06860 | Not Available | Positive | 1553667 - 1554701 | 38894.4 |
| hypothetical protein | DW921_06870 | Not Available | Negative | 1556357 - 1556581 | 8990.98 |
| hypothetical protein | DW921_06875 | Not Available | Negative | 1556674 - 1559160 | 92639.9 |
| 5'-methylthioadenosine/adenosylhomocysteine nucleosidase | DW921_06880 | Not Available | Positive | 1559264 - 1559959 | 25310.3 |
| s-ribosylhomocysteine lyase | DW921_06885 | Not Available | Positive | 1559996 - 1560484 | 18295.0 |
| hypothetical protein | DW921_06890 | Not Available | Positive | 1560712 - 1563621 | 110830.0 |
| hypothetical protein | DW921_06895 | Not Available | Negative | 1563687 - 1564778 | 41760.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


