Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglyceromutase | DW921_06790 | Not Available | Positive | 1537312 - 1538370 | 40920.5 |
| metallophosphatase | DW921_06795 | Not Available | Positive | 1538388 - 1539380 | 36675.7 |
| methionine--trna ligase | DW921_06800 | Not Available | Positive | 1539521 - 1541563 | 77663.8 |
| lipopolysaccharide biosynthesis protein | DW921_06805 | Not Available | Positive | 1541669 - 1543123 | 53975.2 |
| glycosyltransferase | DW921_06810 | Not Available | Positive | 1543120 - 1544082 | 38055.3 |
| sdr family nad(p)-dependent oxidoreductase | DW921_06815 | Not Available | Positive | 1544196 - 1545566 | 51311.3 |
| licd family protein | DW921_06820 | Not Available | Positive | 1545563 - 1546384 | 32205.7 |
| hemolysin activation protein | DW921_06825 | Not Available | Positive | 1546398 - 1547414 | 40299.2 |
| glycosyltransferase | DW921_06830 | Not Available | Positive | 1547424 - 1548260 | 32149.2 |
| glycosyltransferase | DW921_06835 | Not Available | Positive | 1548304 - 1549566 | 47673.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


