Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_06740 | Not Available | Positive | 1522548 - 1523132 | 21872.8 |
| tolc family protein | DW921_06745 | Not Available | Positive | 1523167 - 1524654 | 57004.7 |
| tonb-dependent receptor | DW921_06750 | Not Available | Negative | 1524672 - 1527230 | 93761.7 |
| duf4974 domain-containing protein | DW921_06755 | Not Available | Negative | 1527320 - 1528381 | 40113.9 |
| rna polymerase sigma-70 factor | DW921_06760 | Not Available | Negative | 1528371 - 1528925 | 21920.0 |
| sigma-54-dependent fis family transcriptional regulator | DW921_06765 | Not Available | Positive | 1529165 - 1530532 | 50941.7 |
| pas domain-containing protein | DW921_06770 | Not Available | Positive | 1530551 - 1531876 | 50284.2 |
| hypothetical protein | DW921_06775 | Not Available | Positive | 1532040 - 1532588 | 20275.0 |
| susc/raga family tonb-linked outer membrane protein | DW921_06780 | Not Available | Positive | 1532636 - 1535782 | 115897.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DW921_06785 | Not Available | Positive | 1535807 - 1537291 | 55466.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


