Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyruvate kinase | DW921_06690 | Not Available | Negative | 1510044 - 1511504 | 54130.5 |
| type ii 3-dehydroquinate dehydratase | DW921_06695 | Not Available | Negative | 1511587 - 1512018 | 15620.0 |
| site-specific tyrosine recombinase xerd | DW921_06700 | Not Available | Positive | 1512082 - 1513026 | 35672.1 |
| tetratricopeptide repeat protein | DW921_06705 | Not Available | Positive | 1513181 - 1514851 | 61401.7 |
| duf4369 domain-containing protein | DW921_06710 | Not Available | Positive | 1515001 - 1515999 | 38006.2 |
| atp-binding protein | DW921_06715 | Not Available | Positive | 1516032 - 1517570 | 55268.0 |
| abc transporter atp-binding protein | DW921_06720 | Not Available | Negative | 1517575 - 1518243 | 24706.9 |
| abc transporter permease | DW921_06725 | Not Available | Negative | 1518284 - 1519579 | 49712.9 |
| abc transporter permease | DW921_06730 | Not Available | Negative | 1519586 - 1520893 | 48652.5 |
| hlyd family efflux transporter periplasmic adaptor subunit | DW921_06735 | Not Available | Negative | 1521124 - 1522380 | 46878.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


