Phocaeicola coprophilus strain AM42-38

Gram-negativeNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola coprophilus strain AM42-38 is characterized as a chemoheterotrophic, gram-negative bacterium that thrives in anaerobic conditions. This strain does not exhibit mobility, which is consistent with its lack of flagella. It is classified as mesophilic, indicating that it grows optimally within moderate temperature ranges. The strain is known to associate with Homo sapiens, suggesting a potential role in the human microbiome. The presence of a single replicon within its genetic structure indicates a streamlined genomic organization, which may contribute to its efficient adaptation to specific ecological niches. Given its anaerobic nature and association with humans, P. coprophilus may play a role in the fermentation processes within the gut, contributing to the breakdown of complex carbohydrates and the production of short-chain fatty acids. These metabolic activities could have implications for human health, particularly in relation to gut health and microbiota balance. The accession number QSFT00000000.1 provides a reference for genetic information regarding this strain, facilitating further research into its characteristics and functions. Understanding the ecological role of P. coprophilus can provide insights into its impact on human health, particularly in the context of gut microbiome dynamics.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola coprophilus
Strainstrain AM42-38

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
Habitathuman gut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola coprophilus strain AM42-38 AM42-38.Scaf81, whole

Gene Summary

Adenine Count

960006 bp

Thymine Count

941783 bp

Guanine Count

792831 bp

Cytosine Count

797910 bp

Genome Length

3493311 bp

Protein-coding Genes

2820 genes

Non-Coding Genes

106 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyruvate kinaseDW921_06690Not AvailableNegative1510044 - 151150454130.5
type ii 3-dehydroquinate dehydrataseDW921_06695Not AvailableNegative1511587 - 151201815620.0
site-specific tyrosine recombinase xerdDW921_06700Not AvailablePositive1512082 - 151302635672.1
tetratricopeptide repeat proteinDW921_06705Not AvailablePositive1513181 - 151485161401.7
duf4369 domain-containing proteinDW921_06710Not AvailablePositive1515001 - 151599938006.2
atp-binding proteinDW921_06715Not AvailablePositive1516032 - 151757055268.0
abc transporter atp-binding proteinDW921_06720Not AvailableNegative1517575 - 151824324706.9
abc transporter permeaseDW921_06725Not AvailableNegative1518284 - 151957949712.9
abc transporter permeaseDW921_06730Not AvailableNegative1519586 - 152089348652.5
hlyd family efflux transporter periplasmic adaptor subunitDW921_06735Not AvailableNegative1521124 - 152238046878.4

Displaying genes 1321 – 1330 of 2926 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.