Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphodiesterase | DW921_06580 | Not Available | Negative | 1491501 - 1492046 | 20107.2 |
| hypothetical protein | DW921_06585 | Not Available | Negative | 1492065 - 1492928 | 33678.3 |
| arsr family transcriptional regulator | DW921_06590 | Not Available | Positive | 1493073 - 1493399 | 12537.3 |
| thioredoxin family protein | DW921_06600 | Not Available | Positive | 1494170 - 1494403 | 8703.0 |
| permease | DW921_06605 | Not Available | Positive | 1494420 - 1495388 | 35481.7 |
| arsenate reductase arsc | DW921_06610 | Not Available | Positive | 1495412 - 1495834 | 15533.4 |
| duf2461 domain-containing protein | DW921_06615 | Not Available | Negative | 1496087 - 1496773 | 26524.4 |
| hypothetical protein | DW921_06620 | Not Available | Positive | 1496888 - 1497367 | 17459.1 |
| hypothetical protein | DW921_06625 | Not Available | Positive | 1497340 - 1497654 | 11404.0 |
| hydroxyacid dehydrogenase | DW921_06630 | Not Available | Positive | 1497733 - 1498680 | 33886.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


