Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| undecaprenyl-phosphate glucose phosphotransferase | DW921_06530 | Not Available | Positive | 1479613 - 1481025 | 54456.9 |
| hypothetical protein | DW921_06535 | Not Available | Positive | 1481149 - 1481823 | 25173.4 |
| trna pseudouridine(38-40) synthase trua | DW921_06540 | Not Available | Positive | 1481826 - 1482575 | 28831.3 |
| dna metabolism protein | DW921_06545 | Not Available | Negative | 1482572 - 1483339 | 30224.4 |
| putative dna modification/repair radical sam protein | DW921_06550 | Not Available | Negative | 1483358 - 1484623 | 48190.1 |
| dmt family transporter | DW921_06555 | Not Available | Positive | 1484729 - 1485634 | 34244.1 |
| aldose 1-epimerase family protein | DW921_06560 | Not Available | Negative | 1485729 - 1486610 | 34093.4 |
| histidine kinase | DW921_06565 | Not Available | Positive | 1486738 - 1488762 | 78822.8 |
| dna-binding response regulator | DW921_06570 | Not Available | Positive | 1488767 - 1489522 | 29099.7 |
| duf3943 domain-containing protein | DW921_06575 | Not Available | Positive | 1490000 - 1491481 | 56617.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


