Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| upxy family transcription antiterminator | DW921_06380 | Not Available | Positive | 1448991 - 1449590 | 23581.6 |
| dna-binding protein | DW921_06385 | Not Available | Negative | 1449988 - 1450488 | 18132.7 |
| duf4248 domain-containing protein | DW921_06390 | Not Available | Positive | 1450955 - 1451173 | 7953.69 |
| capsule biosynthesis protein | DW921_06395 | Not Available | Positive | 1451218 - 1453629 | 88808.3 |
| chain-length determining protein | DW921_06400 | Not Available | Positive | 1453635 - 1454771 | 41496.6 |
| virulence protein e | DW921_06405 | Not Available | Negative | 1454787 - 1456907 | 80755.9 |
| hypothetical protein | DW921_06410 | Not Available | Positive | 1457688 - 1458449 | 29360.6 |
| hypothetical protein | DW921_06415 | Not Available | Positive | 1458452 - 1459042 | 22103.6 |
| hypothetical protein | DW921_06420 | Not Available | Positive | 1459035 - 1459508 | 17592.6 |
| duf2589 domain-containing protein | DW921_06425 | Not Available | Positive | 1459513 - 1460049 | 19530.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


