Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3843 family protein | DW921_06325 | Not Available | Positive | 1428704 - 1429867 | 44708.0 |
| duf4981 domain-containing protein | DW921_06330 | Not Available | Positive | 1429954 - 1433547 | 135308.0 |
| glycerophosphodiester phosphodiesterase | DW921_06335 | Not Available | Positive | 1433881 - 1434654 | 28663.8 |
| tonb-dependent receptor | DW921_06340 | Not Available | Positive | 1434686 - 1436119 | 53894.6 |
| tonb-dependent receptor | DW921_06345 | Not Available | Positive | 1436175 - 1439441 | 121442.0 |
| ragb/susd family nutrient uptake outer membrane protein | DW921_06350 | Not Available | Positive | 1439466 - 1441262 | 67680.9 |
| alpha-l-fucosidase | DW921_06355 | Not Available | Positive | 1441440 - 1443599 | 80578.7 |
| trna 2-thiouridine(34) synthase mnma | DW921_06360 | Not Available | Negative | 1443602 - 1444672 | 40062.9 |
| ammonium transporter | DW921_06370 | Not Available | Negative | 1445648 - 1446979 | 47904.1 |
| yeih family putative sulfate export transporter | DW921_06375 | Not Available | Negative | 1447302 - 1448381 | 38253.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


