Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-galactosidase | DW921_06275 | Not Available | Negative | 1414144 - 1416495 | 88519.5 |
| duf229 domain-containing protein | DW921_06280 | Not Available | Positive | 1416934 - 1417908 | 36470.5 |
| hypothetical protein | DW921_06285 | Not Available | Negative | 1418064 - 1418615 | 21025.0 |
| beta-glycosidase | DW921_06290 | Not Available | Positive | 1418839 - 1422450 | 135440.0 |
| glycoside hydrolase | DW921_06295 | Not Available | Positive | 1422569 - 1423579 | 37368.6 |
| serpin family protein | DW921_06300 | Not Available | Positive | 1423725 - 1425032 | 48066.7 |
| alpha-amlyase | DW921_06305 | Not Available | Positive | 1425173 - 1425421 | 9377.13 |
| rpn family recombination-promoting nuclease/putative transposase | DW921_06310 | Not Available | Negative | 1425520 - 1426434 | 35086.6 |
| esterase family protein | DW921_06315 | Not Available | Negative | 1426522 - 1427355 | 31247.4 |
| mfs transporter | DW921_06320 | Not Available | Positive | 1427479 - 1428654 | 42100.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


