Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)h nitroreductase | DW921_06225 | Not Available | Negative | 1401835 - 1402371 | 19984.9 |
| gnat family n-acetyltransferase | DW921_06230 | Not Available | Positive | 1402446 - 1403420 | 38245.5 |
| methylmalonyl-coa epimerase | DW921_06235 | Not Available | Positive | 1403563 - 1403967 | 14603.7 |
| acyl-coa carboxylase subunit beta | DW921_06240 | Not Available | Positive | 1404079 - 1405632 | 56424.0 |
| lamin tail domain-containing protein | DW921_06245 | Not Available | Positive | 1405645 - 1406580 | 34822.6 |
| acetyl-coa carboxylase biotin carboxyl carrier protein subunit | DW921_06250 | Not Available | Positive | 1406604 - 1407032 | 15435.8 |
| sodium ion-translocating decarboxylase subunit beta | DW921_06255 | Not Available | Positive | 1407035 - 1408195 | 41133.6 |
| hypothetical protein | DW921_06260 | Not Available | Negative | 1408414 - 1410714 | 86264.2 |
| beta-glucanase | DW921_06265 | Not Available | Negative | 1410733 - 1411857 | 41618.7 |
| hypothetical protein | DW921_06270 | Not Available | Negative | 1411896 - 1413890 | 74361.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


