Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| branched-chain amino acid aminotransferase | DW921_06170 | Not Available | Positive | 1390997 - 1392016 | 37940.4 |
| duf5009 domain-containing protein | DW921_06180 | Not Available | Positive | 1393037 - 1394143 | 41368.9 |
| hypothetical protein | DW921_06185 | Not Available | Positive | 1394265 - 1394753 | 18406.1 |
| beta-n-acetylglucosaminidase | DW921_06190 | Not Available | Positive | 1395039 - 1397063 | 76994.8 |
| hypothetical protein | DW921_06195 | Not Available | Positive | 1397428 - 1398378 | 34680.1 |
| hypothetical protein | DW921_06200 | Not Available | Positive | 1398381 - 1399301 | 34050.0 |
| septum formation protein maf | DW921_06205 | Not Available | Negative | 1399535 - 1400116 | 21682.1 |
| 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase | DW921_06210 | Not Available | Negative | 1400159 - 1400677 | 19106.2 |
| duf2520 domain-containing protein | DW921_06215 | Not Available | Negative | 1400694 - 1401503 | 30673.4 |
| hypothetical protein | DW921_06220 | Not Available | Negative | 1401506 - 1401832 | 12021.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


