Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mboat family protein | DW921_06120 | Not Available | Positive | 1379412 - 1380917 | 58354.6 |
| dtdp-glucose 4,6-dehydratase | DW921_06125 | Not Available | Negative | 1381316 - 1382455 | 43633.7 |
| metallophosphoesterase | DW921_06130 | Not Available | Negative | 1382526 - 1383017 | 18703.4 |
| rna degradosome polyphosphate kinase | DW921_06135 | Not Available | Positive | 1383081 - 1385174 | 81480.6 |
| hypothetical protein | DW921_06140 | Not Available | Positive | 1385308 - 1385613 | 11339.9 |
| cytidylate kinase-like family protein | DW921_06145 | Not Available | Negative | 1385751 - 1386383 | 23766.2 |
| mate family efflux transporter | DW921_06150 | Not Available | Negative | 1386466 - 1387830 | 49450.4 |
| serine protease | DW921_06155 | Not Available | Positive | 1387991 - 1389373 | 50809.4 |
| exodeoxyribonuclease vii large subunit | DW921_06160 | Not Available | Positive | 1389381 - 1390691 | 50044.2 |
| exodeoxyribonuclease vii small subunit | DW921_06165 | Not Available | Positive | 1390696 - 1390908 | 7957.59 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


