Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-specific glutamate dehydrogenase | DW921_06070 | Not Available | Negative | 1365276 - 1366610 | 49051.8 |
| hypothetical protein | DW921_06075 | Not Available | Negative | 1366763 - 1366942 | 6493.42 |
| nadp-dependent malic enzyme | DW921_06080 | Not Available | Negative | 1367023 - 1369311 | 84330.6 |
| efflux rnd transporter periplasmic adaptor subunit | DW921_06085 | Not Available | Positive | 1369727 - 1370938 | 43625.1 |
| hydrophobe/amphiphile efflux-1 family rnd transporter | DW921_06090 | Not Available | Positive | 1370989 - 1374213 | 117317.0 |
| tolc family protein | DW921_06095 | Not Available | Positive | 1374224 - 1375606 | 50552.8 |
| acyl-acp--udp-n-acetylglucosamine o-acyltransferase | DW921_06100 | Not Available | Positive | 1375629 - 1376396 | 27699.3 |
| tetr/acrr family transcriptional regulator | DW921_06105 | Not Available | Positive | 1376405 - 1377049 | 25558.5 |
| hypothetical protein | DW921_06110 | Not Available | Positive | 1377100 - 1378485 | 51161.4 |
| hypothetical protein | DW921_06115 | Not Available | Positive | 1378454 - 1379434 | 36768.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


