Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chaperonin groel | DW921_06020 | Not Available | Positive | 1353176 - 1354813 | 58241.5 |
| 6-bladed beta-propeller | DW921_06025 | Not Available | Positive | 1354924 - 1356057 | 42740.0 |
| nucleoside deaminase | DW921_06030 | Not Available | Positive | 1356116 - 1356583 | 16976.1 |
| nudix domain-containing protein | DW921_06035 | Not Available | Negative | 1357102 - 1357602 | 19115.4 |
| alpha-l-fucosidase | DW921_06040 | Not Available | Positive | 1357700 - 1359049 | 51582.2 |
| hypothetical protein | DW921_06045 | Not Available | Positive | 1359062 - 1360123 | 41000.7 |
| aspartate-semialdehyde dehydrogenase | DW921_06050 | Not Available | Negative | 1360254 - 1361264 | 37185.7 |
| cation:proton antiporter | DW921_06055 | Not Available | Positive | 1361401 - 1363542 | 80382.6 |
| trna threonylcarbamoyladenosine dehydratase | DW921_06060 | Not Available | Positive | 1363545 - 1364270 | 26939.9 |
| abc transporter atp-binding protein | DW921_06065 | Not Available | Positive | 1364275 - 1364925 | 23790.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


