Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase iii | DW921_05970 | Not Available | Negative | 1338784 - 1340940 | 80849.1 |
| hypothetical protein | DW921_05975 | Not Available | Positive | 1341100 - 1341777 | 24631.1 |
| histidine--trna ligase | DW921_05980 | Not Available | Positive | 1341885 - 1343249 | 50430.9 |
| udp-2,3-diacylglucosamine diphosphatase | DW921_05985 | Not Available | Positive | 1343420 - 1344223 | 30779.8 |
| glycosyltransferase | DW921_05990 | Not Available | Positive | 1344220 - 1345338 | 42970.0 |
| rna degradosome polyphosphate kinase | DW921_05995 | Not Available | Positive | 1345428 - 1347485 | 78489.2 |
| ppx/gppa family phosphatase | DW921_06000 | Not Available | Positive | 1347559 - 1348455 | 33657.1 |
| dna recombination protein rmuc | DW921_06005 | Not Available | Negative | 1348598 - 1349902 | 50014.7 |
| tonb-dependent receptor | DW921_06010 | Not Available | Negative | 1350047 - 1352536 | 92365.5 |
| co-chaperone groes | DW921_06015 | Not Available | Positive | 1352869 - 1353141 | 9720.95 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


