Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DW921_05920 | Not Available | Positive | 1330881 - 1331345 | 16477.7 |
| biopolymer transporter exbd | DW921_05925 | Not Available | Positive | 1331385 - 1331972 | 22323.5 |
| biopolymer transporter exbd | DW921_05930 | Not Available | Positive | 1331976 - 1332440 | 17904.9 |
| gnat family n-acetyltransferase | DW921_05935 | Not Available | Negative | 1332531 - 1333076 | 21173.1 |
| peptidase m64 | DW921_05940 | Not Available | Negative | 1333096 - 1334379 | 48561.3 |
| asnc family transcriptional regulator | DW921_05945 | Not Available | Positive | 1334511 - 1334987 | 17960.7 |
| dihydrofolate reductase | DW921_05950 | Not Available | Negative | 1334996 - 1335511 | 19405.0 |
| thymidylate synthase | DW921_05955 | Not Available | Negative | 1335542 - 1336336 | 30758.9 |
| rrna cytosine-c5-methyltransferase | DW921_05960 | Not Available | Positive | 1336745 - 1338184 | 53381.9 |
| crp/fnr family transcriptional regulator | DW921_05965 | Not Available | Negative | 1338207 - 1338770 | 21975.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


