Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-bladed beta-propeller | DW921_05870 | Not Available | Positive | 1321960 - 1323105 | 42913.0 |
| hypothetical protein | DW921_05875 | Not Available | Positive | 1323145 - 1324230 | 41251.0 |
| 6-phosphofructokinase | DW921_05880 | Not Available | Negative | 1324325 - 1325305 | 35368.6 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | DW921_05885 | Not Available | Negative | 1325395 - 1326258 | 32596.1 |
| (d)cmp kinase | DW921_05890 | Not Available | Negative | 1326245 - 1326943 | 26289.3 |
| energy transducer tonb | DW921_05895 | Not Available | Positive | 1327112 - 1327801 | 25822.8 |
| polyprenyl synthetase family protein | DW921_05900 | Not Available | Positive | 1327986 - 1328969 | 37442.2 |
| tatd family deoxyribonuclease | DW921_05905 | Not Available | Positive | 1328974 - 1329762 | 29772.9 |
| Trna-ser | Not Available | Not Available | Positive | 1329920 - 1330010 | Not Available |
| mota/tolq/exbb proton channel family protein | DW921_05915 | Not Available | Positive | 1330084 - 1330872 | 28074.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


