Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1573 domain-containing protein | DW921_05820 | Not Available | Positive | 1312124 - 1313200 | 39470.9 |
| methylmalonyl co-a mutase-associated gtpase meab | DW921_05825 | Not Available | Positive | 1313204 - 1314313 | 41012.2 |
| acyltransferase | DW921_05830 | Not Available | Positive | 1314304 - 1315449 | 43323.1 |
| polyamine abc transporter atp-binding protein | DW921_05835 | Not Available | Positive | 1315580 - 1316998 | 53017.0 |
| abc transporter permease | DW921_05840 | Not Available | Positive | 1317025 - 1317825 | 29850.1 |
| abc transporter permease | DW921_05845 | Not Available | Positive | 1317819 - 1318613 | 28655.2 |
| extracellular solute-binding protein | DW921_05850 | Not Available | Positive | 1318610 - 1319947 | 51520.0 |
| hypothetical protein | DW921_05855 | Not Available | Positive | 1320121 - 1320378 | 9937.21 |
| hypothetical protein | DW921_05860 | Not Available | Positive | 1320570 - 1320809 | 8481.33 |
| hypothetical protein | DW921_05865 | Not Available | Positive | 1320888 - 1321907 | 38719.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


