Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-deoxy-d-xylulose-5-phosphate synthase | DW921_05770 | Not Available | Negative | 1293481 - 1295388 | 70608.5 |
| gscfa domain protein | DW921_05775 | Not Available | Positive | 1295482 - 1296468 | 38723.3 |
| bifunctional udp-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase/alanine racemase | DW921_05780 | Not Available | Positive | 1296444 - 1298909 | 92463.3 |
| duf349 domain-containing protein | DW921_05785 | Not Available | Negative | 1299150 - 1300955 | 69961.9 |
| magnesium transporter | DW921_05790 | Not Available | Negative | 1301199 - 1302539 | 49667.9 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | DW921_05795 | Not Available | Negative | 1302583 - 1303380 | 30307.0 |
| upf0104 family protein | DW921_05800 | Not Available | Positive | 1303483 - 1304481 | 36940.2 |
| aminoacyl-histidine dipeptidase | DW921_05805 | Not Available | Positive | 1304500 - 1305957 | 53213.6 |
| hypothetical protein | DW921_05810 | Not Available | Positive | 1306085 - 1306321 | 8981.27 |
| alpha-2-macroglobulin | DW921_05815 | Not Available | Positive | 1306426 - 1312059 | 212303.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


