Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-amylase | DW921_05620 | Not Available | Negative | 1255528 - 1257225 | 64476.0 |
| phospholipase | DW921_05625 | Not Available | Negative | 1257222 - 1258025 | 29703.1 |
| [acyl-carrier-protein] s-malonyltransferase | DW921_05630 | Not Available | Negative | 1258118 - 1259005 | 31423.9 |
| bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | DW921_05635 | Not Available | Negative | 1259063 - 1259899 | 29685.9 |
| hypothetical protein | DW921_05640 | Not Available | Negative | 1260011 - 1260211 | 7491.12 |
| pd-(d/e)xk nuclease family protein | DW921_05645 | Not Available | Negative | 1260293 - 1263166 | 110397.0 |
| atp-dependent helicase | DW921_05650 | Not Available | Negative | 1263186 - 1266419 | 123918.0 |
| hypothetical protein | DW921_05655 | Not Available | Positive | 1266708 - 1268144 | 54375.9 |
| hypothetical protein | DW921_05660 | Not Available | Negative | 1268353 - 1268574 | 8387.44 |
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | DW921_05665 | Not Available | Negative | 1268580 - 1269005 | 16048.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


