Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| translation initiation factor if-3 | DW921_05570 | Not Available | Positive | 1246636 - 1247220 | 21938.5 |
| 50s ribosomal protein l35 | DW921_05575 | Not Available | Positive | 1247292 - 1247489 | 7343.35 |
| 50s ribosomal protein l20 | DW921_05580 | Not Available | Positive | 1247592 - 1247942 | 13191.3 |
| 4fe-4s ferredoxin | DW921_05585 | Not Available | Positive | 1248448 - 1249227 | 29706.8 |
| dna/rna non-specific endonuclease | DW921_05590 | Not Available | Negative | 1249308 - 1250201 | 34153.7 |
| hypothetical protein | DW921_05595 | Not Available | Negative | 1250206 - 1250667 | 17358.7 |
| hypothetical protein | DW921_05600 | Not Available | Negative | 1250961 - 1251194 | 8993.88 |
| hpaii family restriction endonuclease | DW921_05605 | Not Available | Positive | 1251313 - 1252398 | 41374.9 |
| hypothetical protein | DW921_05610 | Not Available | Positive | 1252603 - 1254918 | 88416.4 |
| hypothetical protein | DW921_05615 | Not Available | Positive | 1254977 - 1255432 | 16531.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


