Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase s41 | DW921_05520 | Not Available | Negative | 1235294 - 1238560 | 123434.0 |
| hypothetical protein | DW921_05525 | Not Available | Negative | 1238585 - 1238869 | 10948.4 |
| phage holin family protein | DW921_05530 | Not Available | Negative | 1238866 - 1239228 | 13562.4 |
| ytxh domain-containing protein | DW921_05535 | Not Available | Negative | 1239348 - 1239551 | 7194.82 |
| spor domain-containing protein | DW921_05540 | Not Available | Positive | 1239769 - 1240260 | 17728.2 |
| glycoside hydrolase xylanase | DW921_05545 | Not Available | Positive | 1240376 - 1241329 | 34739.8 |
| holliday junction resolvase ruvx | DW921_05550 | Not Available | Positive | 1241467 - 1241895 | 16138.9 |
| peptide deformylase | DW921_05555 | Not Available | Positive | 1241916 - 1242470 | 21088.6 |
| tetratricopeptide repeat protein | DW921_05560 | Not Available | Positive | 1242467 - 1244467 | 77559.9 |
| threonine--trna ligase | DW921_05565 | Not Available | Positive | 1244591 - 1246531 | 74336.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


