Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribokinase | DW921_05470 | Not Available | Negative | 1223200 - 1224096 | 33426.9 |
| inositol-3-phosphate synthase | DW921_05475 | Not Available | Positive | 1224476 - 1225783 | 48625.6 |
| carboxypeptidase-like regulatory domain-containing protein | DW921_05480 | Not Available | Positive | 1226112 - 1228751 | 101350.0 |
| sigma-54-dependent fis family transcriptional regulator | DW921_05485 | Not Available | Positive | 1228826 - 1230097 | 47383.7 |
| hypothetical protein | DW921_05490 | Not Available | Positive | 1230084 - 1230617 | 20212.9 |
| tetratricopeptide repeat protein | DW921_05495 | Not Available | Positive | 1230621 - 1231463 | 32266.9 |
| preprotein translocase subunit secg | DW921_05500 | Not Available | Positive | 1231470 - 1231841 | 12830.6 |
| hypothetical protein | DW921_05505 | Not Available | Negative | 1232272 - 1233408 | 42721.8 |
| duf308 domain-containing protein | DW921_05510 | Not Available | Positive | 1233652 - 1234212 | 20575.3 |
| arac family transcriptional regulator | DW921_05515 | Not Available | Negative | 1234239 - 1235087 | 32968.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


