Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | DW921_05415 | Not Available | Negative | 1208884 - 1210149 | 46797.1 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | DW921_05425 | Not Available | Positive | 1214271 - 1215323 | 39397.6 |
| duf4837 family protein | DW921_05430 | Not Available | Positive | 1215336 - 1216403 | 40481.6 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | DW921_05435 | Not Available | Positive | 1216417 - 1217508 | 40134.9 |
| ndp-sugar synthase | DW921_05440 | Not Available | Positive | 1217518 - 1218228 | 26564.9 |
| hypothetical protein | DW921_05445 | Not Available | Positive | 1218248 - 1219114 | 32746.8 |
| cdp-alcohol phosphatidyltransferase family protein | DW921_05450 | Not Available | Positive | 1219116 - 1220060 | 36823.0 |
| upf0104 family protein | DW921_05455 | Not Available | Positive | 1220060 - 1221067 | 38220.9 |
| had family hydrolase | DW921_05460 | Not Available | Positive | 1221060 - 1221788 | 27240.5 |
| sugar mfs transporter | DW921_05465 | Not Available | Positive | 1221836 - 1223038 | 43948.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


