Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-2-hydroxyacid dehydrogenase | DW921_05315 | Not Available | Positive | 1184116 - 1185075 | 34592.0 |
| c_gcaxxg_c_c family protein | DW921_05320 | Not Available | Positive | 1185075 - 1185542 | 17104.6 |
| hypothetical protein | DW921_05325 | Not Available | Positive | 1185691 - 1185891 | 7433.21 |
| elongation factor 4 | DW921_05330 | Not Available | Positive | 1186334 - 1188115 | 66566.7 |
| rsec/mucc family positive regulator of sigma(e) | DW921_05335 | Not Available | Positive | 1188266 - 1188688 | 15318.3 |
| fe-s cluster domain-containing protein | DW921_05340 | Not Available | Positive | 1188704 - 1189672 | 33213.4 |
| electron transport complex subunit rsxc | DW921_05345 | Not Available | Positive | 1189712 - 1191049 | 47231.1 |
| rnfabcdge type electron transport complex subunit d | DW921_05350 | Not Available | Positive | 1191058 - 1192047 | 35595.8 |
| rnfabcdge type electron transport complex subunit g | DW921_05355 | Not Available | Positive | 1192044 - 1192706 | 22321.9 |
| electron transport complex subunit rsxe | DW921_05360 | Not Available | Positive | 1192724 - 1193308 | 20725.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


