Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh:ubiquinone reductase (na(+)-transporting) subunit b | DW921_05215 | Not Available | Positive | 1163283 - 1164458 | 42336.4 |
| na(+)-translocating nadh-quinone reductase subunit c | DW921_05220 | Not Available | Positive | 1164473 - 1165150 | 24492.0 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit d | DW921_05225 | Not Available | Positive | 1165169 - 1165807 | 22979.0 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit e | DW921_05230 | Not Available | Positive | 1165827 - 1166450 | 22087.1 |
| nadh:ubiquinone reductase (na(+)-transporting) subunit f | DW921_05235 | Not Available | Positive | 1166470 - 1167738 | 46626.6 |
| Trna-arg | Not Available | Not Available | Positive | 1167949 - 1168022 | Not Available |
| Trna-arg | Not Available | Not Available | Positive | 1168048 - 1168121 | Not Available |
| ahpc/tsa family protein | DW921_05250 | Not Available | Positive | 1168214 - 1169302 | 40816.3 |
| arac family transcriptional regulator | DW921_05255 | Not Available | Negative | 1169446 - 1170351 | 34076.5 |
| arac family transcriptional regulator | DW921_05260 | Not Available | Negative | 1170364 - 1171275 | 35219.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


