Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1847 domain-containing protein | DW921_05165 | Not Available | Negative | 1146492 - 1147136 | 24267.0 |
| hsp20/alpha crystallin family protein | DW921_05170 | Not Available | Negative | 1147535 - 1147972 | 16836.7 |
| hypothetical protein | DW921_05175 | Not Available | Negative | 1148255 - 1150108 | 70964.1 |
| trkh family potassium uptake protein | DW921_05180 | Not Available | Positive | 1150207 - 1151712 | 56071.6 |
| acyltransferase | DW921_05185 | Not Available | Negative | 1152068 - 1152955 | 33196.5 |
| agmatine deiminase family protein | DW921_05190 | Not Available | Negative | 1152966 - 1153991 | 39167.6 |
| translocation/assembly module tamb | DW921_05195 | Not Available | Negative | 1154023 - 1158579 | 170917.0 |
| sodium:proton antiporter | DW921_05200 | Not Available | Positive | 1158814 - 1160283 | 52570.7 |
| aminopeptidase | DW921_05205 | Not Available | Positive | 1160302 - 1161690 | 52892.4 |
| na(+)-translocating nadh-quinone reductase subunit a | DW921_05210 | Not Available | Positive | 1161904 - 1163253 | 49365.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


