Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa carboxylase biotin carboxyl carrier protein subunit | DW921_05055 | Not Available | Positive | 1124913 - 1125431 | 19001.8 |
| acyl-coa carboxylase subunit beta | DW921_05060 | Not Available | Positive | 1125434 - 1126966 | 55898.9 |
| tlpa family protein disulfide reductase | DW921_05065 | Not Available | Positive | 1127127 - 1127642 | 19201.1 |
| n-acetylmuramoyl-l-alanine amidase | DW921_05070 | Not Available | Positive | 1127646 - 1128452 | 30649.1 |
| hypothetical protein | DW921_05075 | Not Available | Negative | 1128577 - 1129539 | 36627.2 |
| alpha-1,3/4-fucosidase | DW921_05080 | Not Available | Negative | 1129687 - 1131837 | 80808.9 |
| glycoside hydrolase family 95 protein | DW921_05085 | Not Available | Positive | 1132392 - 1134869 | 93303.4 |
| recombinase reca | DW921_05090 | Not Available | Negative | 1134927 - 1135979 | 37873.4 |
| thioredoxin-dependent thiol peroxidase | DW921_05095 | Not Available | Negative | 1136007 - 1136456 | 17232.8 |
| saccharopine dehydrogenase family protein | DW921_05100 | Not Available | Negative | 1136561 - 1137754 | 44924.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


