Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola coprophilus |
| Strain | strain AM42-38 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | human gut |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Chemoheterotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
960006 bp
Thymine Count
941783 bp
Guanine Count
792831 bp
Cytosine Count
797910 bp
Genome Length
3493311 bp
Protein-coding Genes
2820 genes
Non-Coding Genes
106 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh-quinone oxidoreductase subunit b | DW921_05005 | Not Available | Negative | 1108882 - 1109484 | 22736.7 |
| nadh-quinone oxidoreductase subunit a | DW921_05010 | Not Available | Negative | 1109475 - 1109825 | 12888.2 |
| hypothetical protein | DW921_05015 | Not Available | Negative | 1109944 - 1110339 | 14797.9 |
| tetratricopeptide repeat protein | DW921_05020 | Not Available | Negative | 1110526 - 1112706 | 85474.2 |
| transcription-repair coupling factor | DW921_05025 | Not Available | Positive | 1112784 - 1116146 | 127290.0 |
| histidine-type phosphatase | DW921_05030 | Not Available | Positive | 1116288 - 1117574 | 49186.0 |
| tonb-dependent receptor | DW921_05035 | Not Available | Positive | 1117780 - 1120434 | 100095.0 |
| hypothetical protein | DW921_05040 | Not Available | Positive | 1120485 - 1121915 | 51296.6 |
| acid phosphatase | DW921_05045 | Not Available | Positive | 1122069 - 1123013 | 36136.4 |
| acetyl-coa carboxylase biotin carboxylase subunit | DW921_05050 | Not Available | Positive | 1123377 - 1124888 | 57119.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.


