Segatella copri strain AF11-14

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Segatella

Description

Segatella copri strain AF11-14 is a Gram-negative, rod-shaped bacterium primarily inhabiting the gut of Homo sapiens. This microorganism is classified as an anaerobe, indicating that it thrives in environments devoid of oxygen. The strain is characterized by having a single replicon, which pertains to its genetic structure. The presence of Segatella copri in the human gut microbiome highlights its potential role in human health and disease. As an anaerobic organism, it may contribute to the complex interactions within the gut ecosystem, influencing metabolic processes and maintaining gut homeostasis. The sequencing data for this strain is accessible under the accession number QSAQ00000000.1, facilitating further research into its genetic characteristics and functional capabilities. Exploring the ecological niche that Segatella copri occupies within the human gut underscores its importance in the broader context of microbial diversity and its implications for host health. Understanding the specific functions and contributions of such gut bacteria can provide insights into their roles in digestion, immune response, and the overall balance of the gut microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusSegatella
SpeciesSegatella copri
Strainstrain AF11-14

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Segatella copri strain AF11-14 AF11-14.Scaf125, whole genome

Gene Summary

Adenine Count

1059450 bp

Thymine Count

1053797 bp

Guanine Count

862983 bp

Cytosine Count

859379 bp

Genome Length

3836054 bp

Protein-coding Genes

3143 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sodium:proton antiporterDWV60_08845Not AvailablePositive2183227 - 218548283821.2
hypothetical proteinDWV60_08850Not AvailableNegative2185494 - 218651938405.4
phoh family proteinDWV60_08855Not AvailablePositive2186602 - 218758837077.6
phosphoribosylaminoimidazolesuccinocarboxamide synthaseDWV60_08860Not AvailablePositive2187703 - 218865336199.9
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieDWV60_08865Not AvailablePositive2188665 - 218939927589.6
shikimate dehydrogenaseDWV60_08870Not AvailablePositive2189412 - 219015828031.4
phosphoribosylformylglycinamidine cyclo-ligaseDWV60_08875Not AvailablePositive2190218 - 219136641979.4
peptide chain release factor 1DWV60_08880Not AvailablePositive2191473 - 219258241564.7
orotidine-5'-phosphate decarboxylaseDWV60_08885Not AvailablePositive2192638 - 219348031322.4
udp-3-o-(3-hydroxymyristoyl)glucosamine n-acyltransferaseDWV60_08890Not AvailablePositive2193683 - 219471737156.6

Displaying genes 1731 – 1740 of 3222 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.