Segatella copri strain AF11-14

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Segatella

Description

Segatella copri strain AF11-14 is a Gram-negative, rod-shaped bacterium primarily inhabiting the gut of Homo sapiens. This microorganism is classified as an anaerobe, indicating that it thrives in environments devoid of oxygen. The strain is characterized by having a single replicon, which pertains to its genetic structure. The presence of Segatella copri in the human gut microbiome highlights its potential role in human health and disease. As an anaerobic organism, it may contribute to the complex interactions within the gut ecosystem, influencing metabolic processes and maintaining gut homeostasis. The sequencing data for this strain is accessible under the accession number QSAQ00000000.1, facilitating further research into its genetic characteristics and functional capabilities. Exploring the ecological niche that Segatella copri occupies within the human gut underscores its importance in the broader context of microbial diversity and its implications for host health. Understanding the specific functions and contributions of such gut bacteria can provide insights into their roles in digestion, immune response, and the overall balance of the gut microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusSegatella
SpeciesSegatella copri
Strainstrain AF11-14

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Segatella copri strain AF11-14 AF11-14.Scaf125, whole genome

Gene Summary

Adenine Count

1059450 bp

Thymine Count

1053797 bp

Guanine Count

862983 bp

Cytosine Count

859379 bp

Genome Length

3836054 bp

Protein-coding Genes

3143 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
susc/raga family tonb-linked outer membrane proteinDWV60_08440Not AvailableNegative2067073 - 2070393123595.0
histidine kinaseDWV60_08445Not AvailableNegative2070818 - 207227855726.0
dna-binding response regulatorDWV60_08450Not AvailableNegative2072284 - 207297926381.9
xre family transcriptional regulatorDWV60_08455Not AvailablePositive2073226 - 20734809764.04
nadp-dependent isocitrate dehydrogenaseDWV60_08460Not AvailableNegative2073533 - 207474445538.4
hypothetical proteinDWV60_08465Not AvailableNegative2075028 - 207588231699.7
phosphoribosylformylglycinamidine synthaseDWV60_08470Not AvailablePositive2076326 - 2080057138130.0
chromate transporterDWV60_08475Not AvailablePositive2080085 - 208063619650.6
chromate transporterDWV60_08480Not AvailablePositive2080728 - 208130020709.3
hypothetical proteinDWV60_08485Not AvailablePositive2081314 - 208304766975.6

Displaying genes 1651 – 1660 of 3222 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.