Segatella copri strain AF24-12

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Segatella

Description

Segatella copri strain AF24-12 is a Gram-negative, anaerobic bacterium characterized by its rod shape. This strain is found in the gut of its host, Homo sapiens (humans), indicating its role in the human microbiome. The presence of Segatella copri in the gut suggests it may contribute to various metabolic processes or interactions within the complex ecosystem of gut microbiota. Notably, Segatella copri strain AF24-12 possesses a single replicon, which is indicative of its genomic organization. The accession number for this strain is QRVA00000000.1, which provides a reference for researchers seeking to access genetic information or perform further studies on this bacterium. The gut habitat of Segatella copri implies that it may play a significant role in digestion, nutrient absorption, or even immune modulation in humans. The anaerobic nature of this bacterium suggests it thrives in low-oxygen environments, which is typical for many gut microbiota, as the intestinal tract provides a suitable niche for anaerobic microorganisms. Understanding the characteristics of Segatella copri strain AF24-12 can enhance our knowledge of gut microbiota diversity and its implications for human health. The study of such strains may unveil their potential effects on metabolic diseases, inflammatory conditions, or overall gut health, highlighting the importance of specific microbial communities in maintaining a balanced microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusSegatella
SpeciesSegatella copri
Strainstrain AF24-12

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Segatella copri strain AF24-12 AF24-12.Scaf150, whole genome

Gene Summary

Adenine Count

1073777 bp

Thymine Count

1068693 bp

Guanine Count

868650 bp

Cytosine Count

856647 bp

Genome Length

3868997 bp

Protein-coding Genes

3130 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lincosamide nucleotidyltransferase lnu(an2)DWY11_10120Not AvailableNegative2427175 - 242768719690.2
macrolide efflux mfs transporter mef(en2)DWY11_10125Not AvailableNegative2427712 - 242891744135.4
Trna-serNot AvailableNot AvailablePositive2429241 - 2429328Not Available
fad-dependent thymidylate synthaseDWY11_10135Not AvailableNegative2429661 - 243053633598.8
trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmoDWY11_10140Not AvailablePositive2430648 - 243132825722.8
glycoside hydrolase family 28 proteinDWY11_10145Not AvailableNegative2431356 - 243275951457.4
Trna-pheNot AvailableNot AvailablePositive2432894 - 2432966Not Available
thiamine-phosphate kinaseDWY11_10155Not AvailableNegative2433078 - 243418741352.6
purine-nucleoside phosphorylaseDWY11_10160Not AvailableNegative2434214 - 243502329948.0
tetraacyldisaccharide 4'-kinaseDWY11_10165Not AvailableNegative2434908 - 243608345324.9

Displaying genes 1981 – 1990 of 3203 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.