Segatella copri strain AF24-12

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Segatella

Description

Segatella copri strain AF24-12 is a Gram-negative, anaerobic bacterium characterized by its rod shape. This strain is found in the gut of its host, Homo sapiens (humans), indicating its role in the human microbiome. The presence of Segatella copri in the gut suggests it may contribute to various metabolic processes or interactions within the complex ecosystem of gut microbiota. Notably, Segatella copri strain AF24-12 possesses a single replicon, which is indicative of its genomic organization. The accession number for this strain is QRVA00000000.1, which provides a reference for researchers seeking to access genetic information or perform further studies on this bacterium. The gut habitat of Segatella copri implies that it may play a significant role in digestion, nutrient absorption, or even immune modulation in humans. The anaerobic nature of this bacterium suggests it thrives in low-oxygen environments, which is typical for many gut microbiota, as the intestinal tract provides a suitable niche for anaerobic microorganisms. Understanding the characteristics of Segatella copri strain AF24-12 can enhance our knowledge of gut microbiota diversity and its implications for human health. The study of such strains may unveil their potential effects on metabolic diseases, inflammatory conditions, or overall gut health, highlighting the importance of specific microbial communities in maintaining a balanced microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusSegatella
SpeciesSegatella copri
Strainstrain AF24-12

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Segatella copri strain AF24-12 AF24-12.Scaf150, whole genome

Gene Summary

Adenine Count

1073777 bp

Thymine Count

1068693 bp

Guanine Count

868650 bp

Cytosine Count

856647 bp

Genome Length

3868997 bp

Protein-coding Genes

3130 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1,4-beta-xylanaseDWY11_07780Not AvailablePositive1906951 - 190807542651.1
alpha-n-arabinofuranosidaseDWY11_07785Not AvailablePositive1908122 - 190908436833.9
hypothetical proteinDWY11_07790Not AvailablePositive1909393 - 191076352072.5
abc transporter atp-binding proteinDWY11_07795Not AvailablePositive1910800 - 191151026542.8
trna (guanosine(46)-n7)-methyltransferase trmbDWY11_07800Not AvailablePositive1911607 - 191237730381.3
cytochrome c biogenesis protein cychDWY11_07805Not AvailableNegative1912637 - 191363838476.9
beta-glucosidaseDWY11_07815Not AvailablePositive1915054 - 191740585831.5
xre family transcriptional regulatorDWY11_07825Not AvailableNegative1917829 - 191816712986.6
2,3-bisphosphoglycerate-independent phosphoglycerate mutaseDWY11_07830Not AvailablePositive1918392 - 191991556054.3
uracil-dna glycosylaseDWY11_07835Not AvailablePositive1920018 - 192068325023.9

Displaying genes 1521 – 1530 of 3203 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.