Segatella copri strain AF24-12

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Segatella

Description

Segatella copri strain AF24-12 is a Gram-negative, anaerobic bacterium characterized by its rod shape. This strain is found in the gut of its host, Homo sapiens (humans), indicating its role in the human microbiome. The presence of Segatella copri in the gut suggests it may contribute to various metabolic processes or interactions within the complex ecosystem of gut microbiota. Notably, Segatella copri strain AF24-12 possesses a single replicon, which is indicative of its genomic organization. The accession number for this strain is QRVA00000000.1, which provides a reference for researchers seeking to access genetic information or perform further studies on this bacterium. The gut habitat of Segatella copri implies that it may play a significant role in digestion, nutrient absorption, or even immune modulation in humans. The anaerobic nature of this bacterium suggests it thrives in low-oxygen environments, which is typical for many gut microbiota, as the intestinal tract provides a suitable niche for anaerobic microorganisms. Understanding the characteristics of Segatella copri strain AF24-12 can enhance our knowledge of gut microbiota diversity and its implications for human health. The study of such strains may unveil their potential effects on metabolic diseases, inflammatory conditions, or overall gut health, highlighting the importance of specific microbial communities in maintaining a balanced microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusSegatella
SpeciesSegatella copri
Strainstrain AF24-12

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Segatella copri strain AF24-12 AF24-12.Scaf150, whole genome

Gene Summary

Adenine Count

1073777 bp

Thymine Count

1068693 bp

Guanine Count

868650 bp

Cytosine Count

856647 bp

Genome Length

3868997 bp

Protein-coding Genes

3130 genes

Non-Coding Genes

73 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf1015 domain-containing proteinDWY11_07275Not AvailablePositive1783293 - 178462750305.9
yigz family proteinDWY11_07280Not AvailablePositive1784627 - 178521422292.7
excinuclease abc subunit uvrbDWY11_07285Not AvailableNegative1785381 - 178742677211.2
outer membrane protein assembly factor bamdDWY11_07290Not AvailablePositive1787585 - 178845133124.1
rna polymerase rpb6DWY11_07295Not AvailablePositive1788505 - 178885513602.0
duf4293 family proteinDWY11_07300Not AvailablePositive1788870 - 178933717029.9
30s ribosomal protein s16DWY11_07305Not AvailablePositive1789477 - 179000719029.5
hypothetical proteinDWY11_07310Not AvailablePositive1790049 - 179158156322.9
gggtgrt proteinDWY11_07315Not AvailableNegative1791775 - 179278835921.8
hypothetical proteinDWY11_07320Not AvailableNegative1792804 - 179350525088.2

Displaying genes 1421 – 1430 of 3203 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.