Phocaeicola vulgatus strain AF31-3

Gram-positiveRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola vulgatus strain AF31-3 is a Gram-positive, rod-shaped bacterium that is characterized by its single-cell arrangement and strict anaerobic metabolism. This microbe is host-associated, indicating that it is typically found in association with a specific host organism, although details about the precise host have not been provided. The anaerobic nature of P. vulgatus strain AF31-3 suggests that it thrives in environments devoid of oxygen, which is a common characteristic of many gut-associated bacteria. The rod shape of P. vulgatus strain AF31-3 may facilitate its colonization and persistence in anaerobic niches, such as the gastrointestinal tract of its host, where it can engage in complex interactions with the host's microbiota. This strain is likely involved in various metabolic processes that contribute to the overall health and stability of its microbiome environment. The significance of host-associated, anaerobic bacteria like P. vulgatus strain AF31-3 lies in their potential roles in fermentation and nutrient production, which can influence the host's digestion and immune response. Understanding the specific interactions of this strain with its host could shed light on its ecological role and contributions to the microbiome's functional diversity.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola vulgatus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Phocaeicola vulgatus strain AF31-3
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Phocaeicola vulgatus strain AF31-3

Accession NumberQRQI00000000.1

Gene Summary

Adenine Count

1484022 bp

Thymine Count

1483399 bp

Guanine Count

1069820 bp

Cytosine Count

1074558 bp

Genome Length

5112322 bp

Protein-coding Genes

4162 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dde transposaseDWZ36_00005Not Available+50 - 105439004.1
Trna-asnNot AvailableNot Available+1273 - 1346Not Available
Trna-asnNot AvailableNot Available+1372 - 1445Not Available
adenosine kinaseDWZ36_00020Not Available+1526 - 251235238.9
pdz domain-containing proteinDWZ36_00025Not Available+2556 - 425063076.7
hypothetical proteinDWZ36_00030Not Available-4316 - 661387995.0
hypothetical proteinDWZ36_00035Not Available-7158 - 73376740.96
hypothetical proteinDWZ36_00040Not Available-7425 - 809326052.0
mobilization proteinDWZ36_00045Not Available-8433 - 980052872.3
dna primaseDWZ36_00050Not Available-10024 - 1095035237.8

Displaying genes 1 – 10 of 4234 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites