Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF31-3
Accession NumberQRQI00000000.1
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| mobilization protein | DWZ36_00055 | Not Available | - | 11160 - 12236 | 40726.9 |
| dna-binding protein | DWZ36_00060 | Not Available | - | 12226 - 12579 | 12939.7 |
| hypothetical protein | DWZ36_00065 | Not Available | - | 12836 - 13240 | 15304.9 |
| site-specific integrase | DWZ36_00070 | Not Available | - | 13243 - 14475 | 46519.9 |
| sensor histidine kinase | DWZ36_00075 | Not Available | + | 14707 - 16092 | 53356.8 |
| dna-binding response regulator | DWZ36_00080 | Not Available | + | 16117 - 16818 | 26570.5 |
| gnat family n-acetyltransferase | DWZ36_00085 | Not Available | - | 16869 - 17825 | 36708.9 |
| porin family protein | DWZ36_00090 | Not Available | - | 17939 - 18430 | 17975.4 |
| gamma carbonic anhydrase family protein | DWZ36_00095 | Not Available | - | 18476 - 19000 | 18532.5 |
| aminopeptidase p family protein | DWZ36_00100 | Not Available | - | 19010 - 20791 | 66952.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
