Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_05065 | Not Available | Positive | 1282567 - 1283175 | 23096.2 |
| lysine--trna ligase | DWZ36_05070 | Not Available | Positive | 1283250 - 1284980 | 66465.3 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | DWZ36_05075 | Not Available | Positive | 1285037 - 1286032 | 37117.2 |
| glucose-6-phosphate isomerase | DWZ36_05080 | Not Available | Positive | 1286046 - 1287389 | 49050.8 |
| had family hydrolase | DWZ36_05085 | Not Available | Positive | 1287539 - 1288273 | 27124.5 |
| hypothetical protein | DWZ36_05090 | Not Available | Negative | 1288386 - 1289630 | 47319.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_05095 | Not Available | Negative | 1289643 - 1291232 | 60801.8 |
| susc/raga family tonb-linked outer membrane protein | DWZ36_05100 | Not Available | Negative | 1291248 - 1294985 | 139710.0 |
| duf4974 domain-containing protein | DWZ36_05105 | Not Available | Negative | 1295133 - 1296215 | 41095.2 |
| sigma-70 family rna polymerase sigma factor | DWZ36_05110 | Not Available | Negative | 1296428 - 1297063 | 24920.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

