Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding response regulator | DWZ36_05015 | Not Available | Positive | 1272016 - 1272705 | 26203.9 |
| two-component sensor histidine kinase | DWZ36_05020 | Not Available | Positive | 1272724 - 1274505 | 68725.6 |
| siderophore biosynthesis protein | DWZ36_05025 | Not Available | Negative | 1274976 - 1275602 | 24533.4 |
| gliding motility-associated protein glde | DWZ36_05030 | Not Available | Negative | 1275611 - 1276963 | 50819.5 |
| single-stranded dna-binding protein | DWZ36_05035 | Not Available | Negative | 1277000 - 1277467 | 17305.4 |
| a/g-specific adenine glycosylase | DWZ36_05040 | Not Available | Negative | 1277482 - 1278540 | 40626.7 |
| integration host factor subunit beta | DWZ36_05045 | Not Available | Positive | 1278720 - 1278995 | 10172.4 |
| ribonuclease e/g | DWZ36_05050 | Not Available | Positive | 1279234 - 1280808 | 59689.8 |
| n-acetylmuramoyl-l-alanine amidase | DWZ36_05055 | Not Available | Negative | 1280980 - 1281786 | 30760.1 |
| tlpa family protein disulfide reductase | DWZ36_05060 | Not Available | Negative | 1281793 - 1282335 | 20293.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

