Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf308 domain-containing protein | DWZ36_04965 | Not Available | Negative | 1262429 - 1262995 | 20327.0 |
| ytxh domain-containing protein | DWZ36_04970 | Not Available | Positive | 1263477 - 1263737 | 9298.99 |
| tryptophan synthase subunit beta | DWZ36_04975 | Not Available | Positive | 1263988 - 1265187 | 43987.0 |
| anthranilate synthase component i family protein | DWZ36_04980 | Not Available | Positive | 1265248 - 1266648 | 52812.4 |
| aminodeoxychorismate/anthranilate synthase component ii | DWZ36_04985 | Not Available | Positive | 1266661 - 1267251 | 21601.0 |
| anthranilate phosphoribosyltransferase | DWZ36_04990 | Not Available | Positive | 1267273 - 1268268 | 36463.1 |
| indole-3-glycerol phosphate synthase trpc | DWZ36_04995 | Not Available | Positive | 1268307 - 1269095 | 29293.4 |
| phosphoribosylanthranilate isomerase | DWZ36_05000 | Not Available | Positive | 1269108 - 1269725 | 22898.4 |
| tryptophan synthase subunit alpha | DWZ36_05005 | Not Available | Positive | 1269722 - 1270498 | 28989.2 |
| type i asparaginase | DWZ36_05010 | Not Available | Positive | 1270776 - 1271819 | 38739.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

