Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DWZ36_04810 | Not Available | Positive | 1230904 - 1231197 | 11579.9 |
| site-specific integrase | DWZ36_04815 | Not Available | Negative | 1231263 - 1232474 | 45910.4 |
| site-specific integrase | DWZ36_04820 | Not Available | Negative | 1232494 - 1233723 | 47799.3 |
| recombinase | DWZ36_04825 | Not Available | Positive | 1233840 - 1234181 | 12756.0 |
| hypothetical protein | DWZ36_04830 | Not Available | Positive | 1234293 - 1235216 | 36109.0 |
| dna-binding protein | DWZ36_04835 | Not Available | Positive | 1235348 - 1235635 | 11150.5 |
| mobilization protein | DWZ36_04840 | Not Available | Positive | 1235641 - 1236714 | 40817.8 |
| dna primase | DWZ36_04845 | Not Available | Positive | 1236879 - 1237844 | 37084.0 |
| plasmid mobilization relaxosome protein mobc | DWZ36_04850 | Not Available | Positive | 1237990 - 1238373 | 14353.5 |
| mobilization protein | DWZ36_04855 | Not Available | Positive | 1238339 - 1239259 | 34719.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

