Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| class i fructose-bisphosphate aldolase | DWZ36_04755 | Not Available | Positive | 1218523 - 1219572 | 38207.7 |
| 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | DWZ36_04760 | Not Available | Positive | 1219586 - 1220335 | 28620.3 |
| hsp20/alpha crystallin family protein | DWZ36_04765 | Not Available | Positive | 1220411 - 1220839 | 16605.9 |
| rna polymerase sigma factor | DWZ36_04770 | Not Available | Positive | 1220941 - 1221438 | 19554.6 |
| 6-phosphofructokinase | DWZ36_04775 | Not Available | Positive | 1221461 - 1222447 | 35701.8 |
| sodium:proton antiporter | DWZ36_04780 | Not Available | Positive | 1222461 - 1224707 | 82177.9 |
| alpha-glucan family phosphorylase | DWZ36_04785 | Not Available | Positive | 1224735 - 1227293 | 97897.3 |
| arginase family protein | DWZ36_04790 | Not Available | Positive | 1227310 - 1228119 | 30907.8 |
| methylglyoxal synthase | DWZ36_04795 | Not Available | Positive | 1228172 - 1228708 | 20469.6 |
| dna-binding protein | DWZ36_04805 | Not Available | Positive | 1230688 - 1230891 | 7947.75 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

