Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| linear amide c-n hydrolase | DWZ36_04650 | Not Available | Positive | 1202493 - 1203572 | 39671.6 |
| Trna-lys | Not Available | Not Available | Positive | 1203743 - 1203815 | Not Available |
| site-specific integrase | DWZ36_04660 | Not Available | Positive | 1203918 - 1205117 | 46145.3 |
| hypothetical protein | DWZ36_04665 | Not Available | Positive | 1205194 - 1206081 | 34088.9 |
| hypothetical protein | DWZ36_04670 | Not Available | Positive | 1206320 - 1207333 | 37913.5 |
| hypothetical protein | DWZ36_04675 | Not Available | Positive | 1207492 - 1209312 | 71277.0 |
| hypothetical protein | DWZ36_04680 | Not Available | Positive | 1209431 - 1210123 | 26640.3 |
| duf3871 family protein | DWZ36_04685 | Not Available | Positive | 1210467 - 1211492 | 38579.3 |
| type ii toxin-antitoxin system prevent-host-death family antitoxin | DWZ36_04690 | Not Available | Positive | 1211621 - 1211875 | 9478.1 |
| txe/yoeb family addiction module toxin | DWZ36_04695 | Not Available | Positive | 1211872 - 1212141 | 10900.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

