Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter | DWZ36_04600 | Not Available | Positive | 1177727 - 1179325 | 56692.7 |
| tonb-dependent receptor | DWZ36_04605 | Not Available | Positive | 1179593 - 1182712 | 115361.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_04610 | Not Available | Positive | 1182734 - 1184179 | 54470.2 |
| tonb-dependent receptor | DWZ36_04615 | Not Available | Positive | 1184391 - 1187465 | 113229.0 |
| ragb/susd family nutrient uptake outer membrane protein | DWZ36_04620 | Not Available | Positive | 1187491 - 1188990 | 55427.3 |
| duf4981 domain-containing protein | DWZ36_04625 | Not Available | Positive | 1189120 - 1192290 | 121210.0 |
| glycoside hydrolase family 2 | DWZ36_04630 | Not Available | Positive | 1192375 - 1195215 | 106158.0 |
| dna-binding protein | DWZ36_04635 | Not Available | Positive | 1195363 - 1198593 | 121484.0 |
| sialate o-acetylesterase | DWZ36_04640 | Not Available | Positive | 1198611 - 1200035 | 53436.1 |
| hypothetical protein | DWZ36_04645 | Not Available | Positive | 1200048 - 1202279 | 85678.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

