Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Phocaeicola vulgatus strain AF31-3
Accession NumberQRQI00000000.1
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_00385 | Not Available | - | 59385 - 59915 | 20186.3 |
| rna polymerase sigma factor | DWZ36_00390 | Not Available | - | 59902 - 60414 | 20041.8 |
| duf4252 domain-containing protein | DWZ36_00395 | Not Available | - | 60401 - 60886 | 18464.7 |
| type iii restriction-modification system endonuclease | DWZ36_00400 | Not Available | - | 61117 - 64086 | 113774.0 |
| site-specific dna-methyltransferase | DWZ36_00405 | Not Available | - | 64102 - 66012 | 72564.4 |
| sdr family nad(p)-dependent oxidoreductase | DWZ36_00410 | Not Available | - | 66299 - 67027 | 27028.2 |
| o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase | DWZ36_00415 | Not Available | - | 67038 - 68315 | 46994.8 |
| acyl-coa thioesterase | DWZ36_00420 | Not Available | + | 68438 - 68881 | 16848.2 |
| duf1573 domain-containing protein | DWZ36_00425 | Not Available | - | 68946 - 69674 | 27204.6 |
| duf4221 domain-containing protein | DWZ36_00430 | Not Available | - | 69671 - 70825 | 45151.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
