Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DWZ36_04550 | Not Available | Negative | 1162868 - 1164406 | 55459.3 |
| duf3868 domain-containing protein | DWZ36_04555 | Not Available | Negative | 1164437 - 1165846 | 54467.9 |
| duf3575 domain-containing protein | DWZ36_04560 | Not Available | Negative | 1165853 - 1166425 | 21578.9 |
| duf3868 domain-containing protein | DWZ36_04565 | Not Available | Negative | 1166429 - 1167523 | 40126.8 |
| duf3575 domain-containing protein | DWZ36_04570 | Not Available | Negative | 1167552 - 1168118 | 21274.4 |
| site-specific integrase | DWZ36_04575 | Not Available | Negative | 1168465 - 1169394 | 35843.5 |
| hypothetical protein | DWZ36_04580 | Not Available | Positive | 1169677 - 1172295 | 98454.2 |
| hypothetical protein | DWZ36_04585 | Not Available | Negative | 1172301 - 1172915 | 23675.6 |
| hypothetical protein | DWZ36_04590 | Not Available | Negative | 1172870 - 1173184 | 12303.0 |
| beta-galactosidase | DWZ36_04595 | Not Available | Positive | 1173356 - 1177636 | 162356.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

