Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3987 domain-containing protein | DWZ36_04500 | Not Available | Positive | 1151636 - 1154014 | 90134.6 |
| duf4248 domain-containing protein | DWZ36_04505 | Not Available | Negative | 1154165 - 1154395 | 8949.8 |
| hypothetical protein | DWZ36_04510 | Not Available | Positive | 1154374 - 1154553 | 6809.52 |
| dna-binding protein | DWZ36_04515 | Not Available | Positive | 1154645 - 1155073 | 15492.8 |
| n-acetylmuramoyl-l-alanine amidase | DWZ36_04520 | Not Available | Positive | 1155211 - 1155660 | 17019.3 |
| tyrosine protein kinase | DWZ36_04525 | Not Available | Negative | 1155769 - 1158180 | 89907.9 |
| polysaccharide export protein | DWZ36_04530 | Not Available | Negative | 1158189 - 1158980 | 28967.2 |
| undecaprenyl-phosphate glucose phosphotransferase | DWZ36_04535 | Not Available | Negative | 1159028 - 1160431 | 54484.1 |
| site-specific integrase | DWZ36_04540 | Not Available | Negative | 1160872 - 1161855 | 38291.6 |
| hypothetical protein | DWZ36_04545 | Not Available | Negative | 1161897 - 1162844 | 35988.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

