Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding protein | DWZ36_04450 | Not Available | Negative | 1141991 - 1142389 | 15553.8 |
| hypothetical protein | DWZ36_04455 | Not Available | Negative | 1142566 - 1143339 | 29302.3 |
| site-specific integrase | DWZ36_04460 | Not Available | Negative | 1143473 - 1144603 | 43158.6 |
| duf2264 domain-containing protein | DWZ36_04465 | Not Available | Negative | 1144798 - 1146588 | 70076.9 |
| 4fe-4s dicluster domain-containing protein | DWZ36_04470 | Not Available | Negative | 1146585 - 1147718 | 42687.5 |
| nucleotide sugar dehydrogenase | DWZ36_04475 | Not Available | Negative | 1147824 - 1149074 | 46965.0 |
| toxin-antitoxin system antitoxin subunit | DWZ36_04480 | Not Available | Negative | 1149622 - 1150107 | 19033.9 |
| nucleotidyltransferase domain-containing protein | DWZ36_04485 | Not Available | Negative | 1150104 - 1150394 | 10799.2 |
| upxy family transcription antiterminator | DWZ36_04490 | Not Available | Negative | 1150462 - 1150962 | 18976.7 |
| hypothetical protein | DWZ36_04495 | Not Available | Positive | 1151240 - 1151437 | 7987.94 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

