Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Phocaeicola |
| Species | Phocaeicola vulgatus |
| Strain | strain AF31-3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1484022 bp
Thymine Count
1483399 bp
Guanine Count
1069820 bp
Cytosine Count
1074558 bp
Genome Length
5112322 bp
Protein-coding Genes
4162 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system contractile sheath protein tssc | DWZ36_04250 | Not Available | Positive | 1107665 - 1109044 | 52717.4 |
| hypothetical protein | DWZ36_04255 | Not Available | Positive | 1109157 - 1109771 | 23236.6 |
| hypothetical protein | DWZ36_04260 | Not Available | Positive | 1109777 - 1110349 | 21981.5 |
| tetr/acrr family transcriptional regulator | DWZ36_04265 | Not Available | Positive | 1110919 - 1111695 | 30174.4 |
| single-stranded dna-binding protein | DWZ36_04270 | Not Available | Positive | 1112478 - 1112891 | 15105.8 |
| para family protein | DWZ36_04275 | Not Available | Positive | 1113130 - 1113885 | 27419.8 |
| hypothetical protein | DWZ36_04280 | Not Available | Positive | 1113892 - 1114146 | 9467.61 |
| atp-binding protein | DWZ36_04285 | Not Available | Negative | 1114217 - 1115536 | 51227.8 |
| hypothetical protein | DWZ36_04290 | Not Available | Positive | 1115635 - 1115994 | 13881.3 |
| parb/repb/spo0j family partition protein | DWZ36_04295 | Not Available | Positive | 1116085 - 1117830 | 66813.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

